rs235376886 SNP Detail

Summary

• ID
  rs235376886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:13442577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTAACG CAGACCTTCA
  AAGATCTCAC CTGGTGCTGA GATCCAGAAC GCGGTCACTA TCAACATATG CCATTTTAAA
  ACCGGGCCTC GCAGTTACTG CCACATCCTG AAGTGGCTTT AGACTTTGTC ATGTCTAAAA
  CAACGCCTCT CGCAGCACCA GAGAAAAGCA ATATCTTCGC GCACCTATGC AGGTCTCCCC
  R
  GGTCACAGAT TCTGTGAGTG ACACTATTCC ACAAACCCAG GTGCGGGTGA CCAAGGGACG
  CGCCAGAGTG GAGGGCTCGC GGCGTCTCCA AGGCTCCCCC GCCCCGCCTG CAACTCAGCC
  CTAACTGGAC GGAAGAAACC CCGCCTCCTT CCTGCCTCTG GCTCCCACCA TTGGCTTACC
  GGTACCCGGC AGGTCAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348676298	MGP_WTSI_1_13362434	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235376886					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348676298	MGP_WTSI_1_13362434	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13442577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi41	CpG island 41			within coordinates
Gm29570	predicted gene 29570			97 bp upstream
Gm70663	predicted gene, 70663			1875 bp downstream
Ncoa2	nuclear receptor coactivator 2			Intron
				mRNA-UTR
Rr395968	regulatory region 395968			54 bp upstream
Rr407893	regulatory region 407893			within coordinates
Rr407894	regulatory region 407894			76 bp proximal
Rr407895	regulatory region 407895			157 bp proximal
Rr407896	regulatory region 407896			1319 bp proximal
Rr407897	regulatory region 407897			1720 bp proximal
Rr407898	regulatory region 407898			1906 bp proximal
Tssr5965	transcription start site region 5965			563 bp upstream
Tssr10989	transcription start site region 10989			81 bp downstream
Tssr10990	transcription start site region 10990			1289 bp downstream
Tssr10991	transcription start site region 10991			1526 bp downstream
Tssr10992	transcription start site region 10992			1674 bp downstream
Tssr10993	transcription start site region 10993			1719 bp downstream
Tssr10994	transcription start site region 10994			1768 bp downstream
Tssr10995	transcription start site region 10995			1867 bp downstream