rs235380271 SNP Detail

Summary

• ID
  rs235380271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128813211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGCAAGG ACCAAGAAGA ATGGGGCTTG
  GGTGTGGTCT CGAGACCCCG CCCCACACAA AACCGCCACC CACGTGGCAG CCAATCAGGG
  CCCAGCACGT GTCCACCTCG CCGTTAACCC AGAGGTCTGT GGAGGTAGCT CGGCCGAGGC
  Y
  TGGGCGGTGG GGCGGAGGGA TCTGGCAGTT GGGGCTGTTA GCAGGTGCCG CAGCAGGTGC
  AGCAGCAGTG CGAGGTGGTG GCAGCCCCTG CGCCCGCGAG AAGCCTGCTG CAGGGGGTGG
  CGTGAGGAGC CTCAGGGACT GCGGACCTAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321688013	CHEV_5_129242022	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235380271					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128813211 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	118 bp upstream
Cpgi16665	CpG island 16665	within coordinates
Gm71554	predicted gene, 71554	86 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Rr621172	regulatory region 621172	1831 bp distal
Rr621173	regulatory region 621173	1951 bp distal
Tssr1644	transcription start site region 1644	13 bp upstream
Tssr48983	transcription start site region 48983	54 bp downstream
Tssr48984	transcription start site region 48984	15 bp downstream
Tssr48985	transcription start site region 48985	21 bp upstream
Tssr48986	transcription start site region 48986	95 bp upstream
Tssr53471	transcription start site region 53471	129 bp upstream