rs235380467 SNP Detail

Summary

• ID
  rs235380467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGGACG GCCACCATTG
  CCAATCAGCA GAGCTTCATG ACCACCACTG AGTCTTCTAA AATATTCAGT TCAGATCCGG
  TGCTGGAAAC CTGCCCTTCT GTGTGAACTA CTGCTGCAAA GGTGACTATA TATCGGGCTT
  TACTTGACAA TTGTAAGCTG GACTGTGGAT ATCTCAGGAC TCTGCCATTT CATGGGGACT
  R
  GGCCTAGAAG AGCAGATTTG GTTCTGGGTC CTGAACTGCT GACCAAGTAT TACCAAGTAC
  TATCAAGTAC TACAAAGTAT TACCAAACAG TATCACCCTT CACATTGGTG GCCACAGAAA
  GGGCTTTGGG ACAACCTTTT CTGGCCAGCT GCACAACTGC CCTTCTGAGA CTGATAGGGT
  TTTGATGGCC GGGCTCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360788	MGP_WTSI_12_27127219	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235380467					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360788	MGP_WTSI_12_27127219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492353 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1241 bp distal
Rr464136	regulatory region 464136	1768 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	392 bp downstream
Tssr112998	transcription start site region 112998	1387 bp upstream
Tssr112999	transcription start site region 112999	1434 bp upstream
Tssr113000	transcription start site region 113000	1558 bp upstream
Tssr115902	transcription start site region 115902	503 bp downstream
Tssr115903	transcription start site region 115903	835 bp downstream
Tssr115904	transcription start site region 115904	852 bp downstream
Tssr115905	transcription start site region 115905	1157 bp downstream
Tssr115906	transcription start site region 115906	1285 bp downstream
Tssr115907	transcription start site region 115907	1340 bp downstream
Tssr115908	transcription start site region 115908	1380 bp downstream
Tssr115909	transcription start site region 115909	1466 bp downstream
Tssr115910	transcription start site region 115910	1518 bp downstream
Tssr115911	transcription start site region 115911	1568 bp downstream
Tssr115912	transcription start site region 115912	1582 bp downstream
Tssr115913	transcription start site region 115913	1617 bp downstream
Tssr115914	transcription start site region 115914	1669 bp downstream
Tssr115915	transcription start site region 115915	1698 bp downstream
Tssr115916	transcription start site region 115916	1755 bp downstream
Tssr115917	transcription start site region 115917	1801 bp downstream
Tssr115918	transcription start site region 115918	1820 bp downstream
Tssr115919	transcription start site region 115919	1847 bp downstream
Tssr115920	transcription start site region 115920	1874 bp downstream