rs235383250 SNP Detail

Summary

• ID
  rs235383250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121317073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTATTA ATAGGCATTA
  TAATCAGGGT GACTCTGGCA GGGTGCCAGC AGACCAGGGT AGCTCCTGGG GAGGAATAGG
  TCACCTACAA CTGGTAAGGA CAAGAGGGGC TGGATCTGAG TGTGAAACCC TCACCACTGG
  GCGCTGAGGT GAGGTGTAAT CTTAGTATTC CATAGGTGGA AGCAAGAAGG ATCACCAGCT
  R
  GGGACAGCCT GAGTCACTCA GCATTTCCTA TCTCAAAAAT AAAGATATGC AAGGATAGGG
  GCGTACTCTA ATAGAGGGGT TACCCCCTGT CTTAGTCAGG GTTTCTATTC CTGCACAAAC
  ATCATGGCCA AGAAGCAAGT TGGGGAGGAA AGGGTTTATT CGGCTTACAC TTCCATGCTG
  CTGTTCATCA CCAAGGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376274039	MGP_WTSI_8_123114234	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235383250					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376274039	MGP_WTSI_8_123114234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121317073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	661 bp distal
Gins2	GINS complex subunit 2	1259 bp upstream
Gm10614	predicted gene 10614	within coordinates
Rr401181	regulatory region 401181	1096 bp downstream
Rr671590	regulatory region 671590	809 bp distal
Rr671591	regulatory region 671591	797 bp distal
Rr671592	regulatory region 671592	within coordinates
Rr671593	regulatory region 671593	1386 bp proximal
Tssr83202	transcription start site region 83202	1284 bp upstream
Tssr83203	transcription start site region 83203	1266 bp upstream
Tssr83204	transcription start site region 83204	1254 bp upstream
Tssr83205	transcription start site region 83205	1244 bp upstream