rs235385953 SNP Detail

Summary

• ID
  rs235385953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86248078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCAATC GTGGAAAGTG
  TGGAAAAGGG ATACACTGTT CGATACAAGG GGCGGGGGGC GGGGAGGCGG GGAAGCAAGA
  AGCACACAAG AAAATATTAC TATCCGGGCA GATAAGCAGC CCAAGTTAAG GAAAAGACTA
  GGATGGGGAA AAGAGTCCAA AACAAGACAG GAGGAGGAGA AAGACCGAGG GGGTGGGGGG
  R
  AAGACAAGCC TCTTCCCAGC AGAGCCCCGG TCGGTAGGTG AGCGGACGCT GCCTCCCGGG
  GCGGCCGCAG AGCCTCGGAG GAGGCCGACT CCGGCGGGGC CTAGCCGGGG GACACCGGCA
  TCTGGATGCG ACCCAGACCC CCTCCCCCAC GGCCCAAGGG CGCACGGCGC GGCCCCCTCC
  CCCACCGCCC GCGGCCCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384126882	MGP_WTSI_11_86170754	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235385953					SNP	G	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384126882	MGP_WTSI_11_86170754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86248078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3473	CpG island 3473	within coordinates
Gm74255	predicted gene, 74255	889 bp downstream
Med13	mediator complex subunit 13	within coordinates
Rr402823	regulatory region 402823	928 bp upstream
Rr453539	regulatory region 453539	within coordinates
Rr453540	regulatory region 453540	340 bp proximal
Rr453541	regulatory region 453541	1030 bp proximal
Rr453542	regulatory region 453542	1193 bp proximal
Tssr109839	transcription start site region 109839	1120 bp upstream
Tssr109840	transcription start site region 109840	94 bp downstream
Tssr109841	transcription start site region 109841	318 bp downstream
Tssr109842	transcription start site region 109842	658 bp downstream
Tssr109843	transcription start site region 109843	915 bp downstream
Tssr109844	transcription start site region 109844	931 bp downstream
Tssr109845	transcription start site region 109845	966 bp downstream
Tssr109846	transcription start site region 109846	984 bp downstream
Tssr109847	transcription start site region 109847	1032 bp downstream