rs235389442 SNP Detail

Summary

• ID
  rs235389442
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89530143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCACATT TTACATGTCT
  AACCTGGAGT CCTTGTAGCC TGTCACCACA GGAGGGAGGT CAGGACCCAG CACCCACTTT
  TTCCTTTGTT GAGCTGACTA AAGACTGTTA AGTTCTGGGA CCATAGCTTG GTGTTAGAGC
  AGTTGTCTAG TGTGTGGAGG CCCTGTGTTG GTTGCACTGC ACTGCAGAAG GGGGGGGGGG
  K
  GGTAATCGAA GCCGTGCTTG GTTTGTGATG AGGAATGACA AGCCACAGTG GAGGTCACTT
  GTGGCATCAA ACAGGAGCCA GGCAGCCTGA CCCACACCTA GCAGAAGGCT CAGTGGGCTA
  CCCACGCCCA CCAGTGTAAT CTCTGCCCTA CTGTTAAATT GCAGTGCAGT AGTACTTTAT
  CTAAACCAGT GCCTGTGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss350432126	MGP_WTSI_1_91498996	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	T	G	T	T	G	G	T	G	G	T	T	T	T	T	G	T	G	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs235389442					SNP	G	G	T	G	T	G	T	T	G	G	T	G	G	T	T	T	T	T	G	T	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350432126	MGP_WTSI_1_91498996	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89530143 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	803 bp upstream