rs235391387 SNP Detail

Summary

• ID
  rs235391387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30870517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAATAAC TGAGGATGAT
  CAGGAAGGGT ACAAGTTGTT TTGGTCCTGG TCACAGCAGT AGGAAGCAAA CTGAGACAAT
  TGGGATTACA TAACTGAGAG AGTAGTGGGC AGTAGTTACA AAAGCCAAAG AAGAACCCAG
  TGCTCTGCTC GCTGTGAATG GTGAAATGGG GGGTCGGGTG AGAGGCAATG AAGCAGTTGG
  Y
  GCACGCTCCT GCAAAGCCAT TTGATATTCT GGAAATCACA GAGTAAGGTT CTGCCAGTCA
  AGGGATCTGT ATCAGAAGAC ATATGCCAGA GGAAAATTTA TCAAAATGAC CCTAAAACCT
  GAAGCCAAGG CTTGACAGGG ACTGAGTAAG CACACCAGCA CTGAGCTATC CCCACCATTT
  CTTGTTTACT TTATGACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353527997	MGP_WTSI_2_30836025	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235391387					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353527997	MGP_WTSI_2_30836025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30870517 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	within coordinates
Cpgi11462	CpG island 11462	931 bp proximal
Rr42647	regulatory region 42647	517 bp distal
Rr56598	regulatory region 56598	483 bp proximal
Tssr17159	transcription start site region 17159	1449 bp upstream
Tssr17160	transcription start site region 17160	1474 bp upstream
Tssr17161	transcription start site region 17161	1823 bp upstream
Tssr17162	transcription start site region 17162	1845 bp upstream
Tssr23415	transcription start site region 23415	1352 bp downstream
Tssr23416	transcription start site region 23416	1677 bp downstream
Usp20	ubiquitin specific peptidase 20	1774 bp upstream