rs235392162 SNP Detail

Summary

• ID
  rs235392162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61120256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAATCTC CATGCAGGAT
  CTACAATCCC TTCTTCAAGC CTCAGTTTCT CCATCAATGT TCCTACCCAG ACTGATGGAG
  GGTCAGAGTA AAAGATGTCA CAAGCACCCA CCACCTCTGA GAGCTTGTTG GGTTTGTCAC
  TGGCTGGCCC TCTTATGCAC CAGGTCTGGC CAACCCCCAC CCTTTCCTCT GTGTGCCCCT
  Y
  ATTTTACTAT TTGGTGCCAG TCCGTTGATG ACCAGCAATG GACTGCAGGG GAAAGAAGTG
  TTTGGGGGCT CTGATCCCGG GTTCTGACCA GATCCGGGTT TTGTGTAGCT TTGGGTAAAT
  CCTTTGCCCT CTTCAGGCTT TAGTTTCGCC AACCAGAAGA TGCCTATGCC CTGCCTTCCG
  TTGGCTAACA TGCCCCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400872534	MGP_WTSI_18_61146838	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235392162					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400872534	MGP_WTSI_18_61146838	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61120256 () rs orientation: forward

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	within coordinates
Rr538733	regulatory region 538733	469 bp proximal
Rr538734	regulatory region 538734	1843 bp proximal
Tssr151379	transcription start site region 151379	1502 bp downstream
Tssr151380	transcription start site region 151380	1431 bp downstream
Tssr151381	transcription start site region 151381	1399 bp downstream
Tssr151382	transcription start site region 151382	1287 bp downstream
Tssr151383	transcription start site region 151383	1257 bp downstream
Tssr151384	transcription start site region 151384	1215 bp downstream
Tssr151385	transcription start site region 151385	1165 bp downstream
Tssr151386	transcription start site region 151386	1113 bp downstream
Tssr151387	transcription start site region 151387	1074 bp downstream
Tssr151388	transcription start site region 151388	1050 bp downstream
Tssr151389	transcription start site region 151389	345 bp upstream
Tssr151390	transcription start site region 151390	562 bp upstream
Tssr151391	transcription start site region 151391	750 bp upstream