rs235405438 SNP Detail

Summary

• ID
  rs235405438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66206526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGTGTTC TTTAATCCGG
  ATCACAATTT CACAGCTGTT CAATAGGCCA CATACAAAGA TCTTCCTTTT GCAAAAATGG
  GGAAACTGAG GCTTGAAGCC TGCCGTACGA TGCGGGAGGC GCAGGGGTGC GAGTGGCTCA
  GCGCCGCGAC TAGGTGCGGA TCTCTGTAGT GGCTGTTGTC TTTTGGGCAT GAGTCATTGC
  R
  TTTGGACCTC CCTTTCAGTT CCTGGGACAG CGCATAATAA ATAAGATGTT GTGTATTTAA
  AGACGTGCTG CAGACATCCA GACCCGTTTT GCTGAGCTGA CTGCATTCAT CCAGTTCTTT
  AGAGAAATGC TCCACCAGGC CGAGACGTCT GATCCCACCG GATCACTTTA TAGATGGTAA
  TCTGAGGCCT GGAGACCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367286	MGP_WTSI_14_66587914	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235405438					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367286	MGP_WTSI_14_66587914	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66206526 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	within coordinates
Rr290025	regulatory region 290025	526 bp distal
Rr297400	regulatory region 297400	within coordinates
Tssr126237	transcription start site region 126237	567 bp downstream
Tssr126238	transcription start site region 126238	553 bp downstream
Tssr126239	transcription start site region 126239	538 bp downstream
Tssr126240	transcription start site region 126240	519 bp downstream
Tssr126241	transcription start site region 126241	510 bp downstream
Tssr126242	transcription start site region 126242	480 bp downstream
Tssr126243	transcription start site region 126243	470 bp downstream
Tssr126244	transcription start site region 126244	452 bp downstream
Tssr126245	transcription start site region 126245	426 bp downstream
Tssr126246	transcription start site region 126246	420 bp downstream
Tssr126247	transcription start site region 126247	637 bp upstream
Tssr126248	transcription start site region 126248	664 bp upstream
Tssr126249	transcription start site region 126249	724 bp upstream
Tssr126250	transcription start site region 126250	1451 bp upstream
Tssr126251	transcription start site region 126251	1509 bp upstream
Tssr126252	transcription start site region 126252	1517 bp upstream
Tssr126253	transcription start site region 126253	1533 bp upstream
Tssr126254	transcription start site region 126254	1551 bp upstream
Tssr126255	transcription start site region 126255	1584 bp upstream
Tssr126256	transcription start site region 126256	1807 bp upstream
Tssr126257	transcription start site region 126257	1972 bp upstream