rs235406039 SNP Detail

Summary

• ID
  rs235406039
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77441174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGACTGTG GGTGACTGTG
  TCAGCCCTGA CTGGCCTGAT TTGCAGGTGT TAGCAGACAG ACACAGAGGG CCTGTGGGCT
  GCATTCTAAA AACTCACGCC AAGATACAAG GAAAGGACAC TCTTGACCCC TTAGCCAGGG
  CTCCCGATGG ATCTTCCAGC TCAAGCTTCC CTTGTTTTGC TTATCTAGTT GACTCCTTGG
  S
  CATGTTATTA AACTTCTAGG CATCTTGGTG TGCTGTGTAA AATGGGTTAT TAGTGTCCAC
  AATAGCATTC CAGAAACAGC AAATGGTAGG TCAGAAGGGA AGCTTTCTGT GCCTGTCACT
  CTCACCCACC CAAGCCACCT AGTGGTTACT TTGGGACTAC GTAAGGAGGG AGAAAGGCAG
  CTAGATAGTG AGAATGAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380971326	MGP_WTSI_10_77068085	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235406039					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971326	MGP_WTSI_10_77068085	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77441174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1760	CpG island 1760	190 bp proximal
D10Jhu54	DNA segment, Chr 10, Johns Hopkins University 54	571 bp distal
Gm49325	predicted gene, 49325	857 bp upstream
Rr384959	regulatory region 384959	1402 bp downstream
Rr402005	regulatory region 402005	1076 bp upstream
Rr434545	regulatory region 434545	1077 bp distal
Rr434546	regulatory region 434546	267 bp proximal
Rr434547	regulatory region 434547	1242 bp proximal
Sumo3	small ubiquitin-like modifier 3	757 bp upstream
Tssr94265	transcription start site region 94265	704 bp upstream
Tssr94266	transcription start site region 94266	877 bp upstream
Tssr94267	transcription start site region 94267	904 bp upstream
Tssr94268	transcription start site region 94268	1238 bp upstream
Tssr94269	transcription start site region 94269	1321 bp upstream
Tssr94270	transcription start site region 94270	1355 bp upstream
Tssr98239	transcription start site region 98239	1773 bp downstream