rs235407914 SNP Detail

Summary

• ID
  rs235407914
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAATACCC CAAGGTGACA CCAGAGTACA GTGTAGTCAC
  CTAATTCTCC ACATGGAGAA ACTGCATGGG CTTTCCACAT CAGAACATCC AAGCCTAGTC
  M
  ACCAGTCCTA CCCACTAGTC CTGTTCTTGT AACATAATGC TCCTCTGCCC AGCCCACTTT
  CAGACTTAAA ACTCCAGGCA CCTAAATTCT TGAATACTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322135231	CHEV_7_31340091	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235407914					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1538 bp distal
Cpgi18810	CpG island 18810	475 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	369 bp downstream
Rr644849	regulatory region 644849	1794 bp distal
Rr644850	regulatory region 644850	1571 bp distal
Tssr65780	transcription start site region 65780	1800 bp downstream
Tssr65781	transcription start site region 65781	1763 bp downstream
Tssr65782	transcription start site region 65782	278 bp downstream
Tssr65783	transcription start site region 65783	212 bp downstream
Tssr65784	transcription start site region 65784	188 bp downstream
Tssr65785	transcription start site region 65785	133 bp downstream
Tssr65786	transcription start site region 65786	120 bp downstream
Tssr65787	transcription start site region 65787	25 bp downstream
Tssr71789	transcription start site region 71789	384 bp upstream
Tssr71790	transcription start site region 71790	242 bp upstream