rs235421444 SNP Detail

Summary

• ID
  rs235421444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCGTCGCT CCGAAGATAC
  CAATCAAGTT CAACTGATAA ATAATTTCAT TTGTTCATGG CCAGTGTAAC CTTACCTGTG
  GAATGGACCA GTGTCCTGAA GATCTTGTCT GTGCTCCGCT GTCTACAGCC CATGATAGCC
  AAATTACTCA GAAATCACCA GCCACGAAAG TGAGCGCCGC AAGACGGTGG GGGAAACGCG
  R
  CTGAGAGCCC CGGCCACCCC CGCTACTGAG ACAGCGGGTT GAGGCGGCCT GGCACCCCGC
  GCGCCTTGCA CTGTCCGCAC CAGAGTCTGC AGTCCCGAGG CGGCTTCACC TCAGCGGGGG
  AGACATCAGC CCCAAGGGAG CTCCACACAG TTTCCGCGGC CCCGCGGCGC CGGCCGGAGC
  GCGCGGCCTC CTGATTGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646618	CHEV_14_60059549	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235421444					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678161 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	239 bp upstream
Cpgi6560	CpG island 6560	within coordinates
Gm45935	predicted gene, 45935	within coordinates
Rr404137	regulatory region 404137	45 bp upstream
Rr493048	regulatory region 493048	1804 bp distal
Rr493049	regulatory region 493049	within coordinates
Rr493050	regulatory region 493050	153 bp proximal
Rr493051	regulatory region 493051	280 bp proximal
Setdb2	SET domain, bifurcated 2	within coordinates
Tssr125903	transcription start site region 125903	130 bp downstream
Tssr125904	transcription start site region 125904	235 bp upstream
Tssr129008	transcription start site region 129008	67 bp downstream
Tssr129009	transcription start site region 129009	376 bp downstream
Tssr129010	transcription start site region 129010	391 bp downstream
Tssr129011	transcription start site region 129011	590 bp downstream
Tssr129012	transcription start site region 129012	597 bp downstream
Tssr129013	transcription start site region 129013	599 bp downstream