rs235422178 SNP Detail

Summary

• ID
  rs235422178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96143050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAACAT GAGACCTACA
  CCAGAGACTC TCTGGATGAA AAATATGGGA GACATGTTTG GATAATTGAA GTGATATGTT
  TCACTTTGTC TGAAAAAAAT CATAAGCTTA GGTTGGTTGC TCATGGAAAA AAGGGTGATG
  TTTATTTGCT GGAAAGAGCA GGAAGGAAGA TAATATGAAC ATAATGAAAG CAGTCGTATA
  Y
  TTTTTAAAAG TAAATCAGAT TCATTATGAA TAAAGTATAA ACAAGTAACA CAAAGGGGAA
  TTCTGTGTTC TTATATAATT TTCACTTATA CATATTATAG CTACTCTTTT TGGGGCGGGG
  GGACCTATAT GGTCTTATAT GTAGCTCAGT CTGTTAGAAC TTTGGAGGTG GGGGTGGGGG
  TGGAGGCAGG TACAAGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107377	CHEV_9_96161416	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235422178					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96143050 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1763 bp downstream
Tssr86594	transcription start site region 86594	1984 bp downstream
Tssr86595	transcription start site region 86595	1736 bp downstream
Tssr86596	transcription start site region 86596	1720 bp downstream