rs235425050 SNP Detail

Summary

• ID
  rs235425050
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6920838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTATGT CCCCAAGATC
  AGTGGGAGGT AAGCAGAGCC CCAAAGAAGT GACTTTTCTC TTTATTTATT TATTTATTCA
  TTTATTTATT GTATGTGAGT ACACTGTAGC TGTCTTCAGA AGAGGGCATC AGATCCCATT
  ACAGATGGTT GTGAGCCACC ATGTGGTTGC TGGGAATTGA ACTCAGTACC TCTGGAAGAG
  S
  AGTCAGTGCT CTTAACCACT GAGCCATCTC TCCAGCCCAA GAAGTGGCCA GTAGGTCCGT
  TCGTTCGTTC GTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TTTTTAAAAT GATTATTTTT
  TGGTTTTTCA AGACAGGGTT TCTCTGTGTA GCTCTGGCTA TCTTGGAACT CACTCCTACA
  GAAAAACCAA TAAATAAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683401	MGP_WTSI_19_7017960	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235425050					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683401	MGP_WTSI_19_7017960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6920838 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	within coordinates
Cpgi10534	CpG island 10534	818 bp distal
Gm19053	predicted gene, 19053	1601 bp downstream
Gpr137	G protein-coupled receptor 137	1020 bp upstream
Rr405833	regulatory region 405833	1807 bp downstream
Rr405834	regulatory region 405834	1470 bp downstream
Rr405835	regulatory region 405835	765 bp downstream
Rr543510	regulatory region 543510	1137 bp distal
Rr543511	regulatory region 543511	1585 bp distal
Rr543512	regulatory region 543512	896 bp distal
Tssr154697	transcription start site region 154697	1580 bp downstream
Tssr154698	transcription start site region 154698	1538 bp downstream
Tssr154699	transcription start site region 154699	886 bp downstream
Tssr154700	transcription start site region 154700	863 bp downstream
Tssr154701	transcription start site region 154701	832 bp downstream
Tssr157902	transcription start site region 157902	1952 bp upstream
Tssr157903	transcription start site region 157903	1640 bp upstream
Tssr157904	transcription start site region 157904	1027 bp upstream