rs235436644 SNP Detail

Summary

• ID
  rs235436644
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129273059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCAAGCT AGGGGGCCGG
  ATATGCCAGC CTAGAGGACC CTGTAACAGG TATTGGACTG AGGGATGCTG GGAGAACCTG
  GTGGCCAGGT CAGCTTTGAC ATGTTAACTA GGCACCCCAG CTATTTGTCC CAGGTTTGAC
  ACCTAACAGT TTCTTAATGT CACACCTGTT TACCCCAGGG GTGCTCTGTG ATTAAGATTC
  S
  TTTCCTGGAC TTTTGAGGTA ATGGGAGATA ATGGAAGGAA AGGTAGACCA GTGCTTATTT
  GAAAATCACT AGGACAGGGC TGGTGAGATG GCTCAGCGGT TAAGAGCACT GACTGCTCTT
  CCAAAGGTCC CGAGTTCGAA TCCCAGCAAC CACATGGTGG CTCACAACCA TCCATAATGA
  GATCTGACGC CCTCTTCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312502	CHEV_4_129056510	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235436644					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129273059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1187 bp distal
Gm12980	predicted gene 12980	578 bp upstream
Rr377177	regulatory region 377177	548 bp upstream
Rr600215	regulatory region 600215	1161 bp distal
Rr600216	regulatory region 600216	1685 bp distal
Rr600217	regulatory region 600217	894 bp distal
Tssr43497	transcription start site region 43497	1428 bp upstream
Tssr43498	transcription start site region 43498	1342 bp upstream
Tssr43499	transcription start site region 43499	1316 bp upstream
Tssr43500	transcription start site region 43500	260 bp upstream
Zbtb8a	zinc finger and BTB domain containing 8a	1238 bp upstream