rs235439484 SNP Detail

Summary

• ID
  rs235439484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26051186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGCCCT CAACCTTGCA
  TCTTGTCAGC CCACCTCGCT GCAGATTGGC AATGGCCTCA TCATAACTCT CCATCTCCAG
  CTGGCACTGC CCCAGGAAGA AGTGCGCCTT CACAGACTGC CCGTCCAGCT CCAGGGCTCG
  CCGGCAGTCA GCAAGTGCCT GTTCAGGCTG CTGCATCTTC AGATAGCACA GGGCCCGGTT
  R
  GTGTAGTACA CTGCCACAAG TGGGTTCCGA GTCTGGGGAC CAAGACCAGG CGTCAAAGAG
  TGTGGGCTCA GTTGATCCCC TCTCATTTAG CAAGCTGAAA GCCAATGATC TGGTCAATGC
  TCCAGCTTTG GGGGCCCATG GCTGGAATAG AGGAACTGGA GATTTCCGAA TTATCAAGAG
  CTCTGGATTC TGGCCATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397885780	MGP_WTSI_17_25969157	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235439484					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397885780	MGP_WTSI_17_25969157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26051186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	within coordinates
Gm56915	predicted gene, 56915	471 bp upstream
Jmjd8	jumonji domain containing 8	369 bp downstream
Mir3082	microRNA 3082	784 bp upstream
Rr405106	regulatory region 405106	606 bp upstream
Rr523679	regulatory region 523679	719 bp proximal
Rr523680	regulatory region 523680	1139 bp proximal
Stub1	STIP1 homology and U-Box containing protein 1	within coordinates
Tssr143193	transcription start site region 143193	895 bp upstream
Tssr146863	transcription start site region 146863	656 bp downstream
Tssr146864	transcription start site region 146864	678 bp downstream
Tssr146865	transcription start site region 146865	1153 bp downstream