rs235442479 SNP Detail

Summary

• ID
  rs235442479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56674951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACTATAGT ACATCTGTAC ATCTATAAAA
  GAAAAATGGA AAGGATGGTT AAAATGCTAA GTGGGTATAT TTTAGGCATT TTGAAAAGTG
  AACATACACt ataatatgta tttatatatg tatgtactct acatatgaat atacaaatat
  R
  tttgtacaga gactcaccaa tatttatttg tacacatata tacatTCTTT TTTAAAAATC
  AGCAATAttt tattttatat gtgtggatgt tttgcctgca tgtatgcctg tgcaccacat
  tcatatattg cccagggaag ccaaaagagg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319732772	CHEV_1_56692636	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235442479					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56674951 () rs orientation: forward

Symbol	Name	Function Class
Gm70103	predicted gene, 70103	within coordinates
Hsfy2	heat shock transcription factor, Y-linked 2	252 bp downstream
Tssr11733	transcription start site region 11733	1616 bp downstream
Tssr11734	transcription start site region 11734	1633 bp downstream
Tssr11735	transcription start site region 11735	1638 bp downstream
Tssr11736	transcription start site region 11736	1663 bp downstream
Tssr11737	transcription start site region 11737	1669 bp downstream