rs235453236 SNP Detail

Summary

• ID
  rs235453236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152949138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCATGAAT ATATTAAAAT
  ACATAGCAAA CACATTAGTG TTGGGTGACT GGGATTTCTA CGTGGGCTGG GGACCAGGCT
  GTGTAGGAGG CAGCTCTGGT TGTCAGAACT GCTACTGGGC CTAGCGGGTG GAACTCTAGA
  GCTGCTAACA CCGCTCGCGC TCAGAATTCA TACTTAAAAC ATAGTACTGC TAAACGCATG
  Y
  CTACATGCAC GCGTAAGCGA ATGAATGAGA GATACTGGTG GTCTGGCCTG GCTAGAGGAG
  GGAGGACTCC TGTACGTTTC TGCAGGTGTG TGTTGCAGTT TAGAGAGTGT TGGTCCCTGT
  CGTTTTGAAT GATGTCTCAG GCTGAGTGGA ATATGCCATG CAAACAGGAC CTCAGTGGTC
  TGCCAGTAAG ACTTCCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356165366	MGP_WTSI_2_152932954	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235453236					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356165366	MGP_WTSI_2_152932954	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152949138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1227 bp proximal
Hck	hemopoietic cell kinase	1250 bp upstream
Rr567550	regulatory region 567550	148 bp proximal
Rr567551	regulatory region 567551	973 bp proximal
Rr567552	regulatory region 567552	1289 bp proximal
Rr567553	regulatory region 567553	1453 bp proximal
Tssr20863	transcription start site region 20863	438 bp upstream
Tssr20864	transcription start site region 20864	484 bp upstream
Tssr20865	transcription start site region 20865	1256 bp upstream
Tssr20866	transcription start site region 20866	1271 bp upstream
Tssr26882	transcription start site region 26882	1800 bp downstream