rs235459642 SNP Detail

Summary

• ID
  rs235459642
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16362170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGTTA TGTTACTTTG
  TCACTTTTTA ACAGACCGGT TCCAGTTCGC CCACGGGGAG CCTGGACACC ATACCAATGG
  TAAGAAGTAC TTTTCTCAAT TGTTTTTGTG TGTGGCTGAA GATCCTTCCG GTGTCTTCGA
  ACCTCCATCC TCATCTCACA CCCACCCAAA GTATCTGCCC TTGGGAAACT TATCCTAGTT
  S
  TTTTTCTGGG AAACTTGAGT TTCTCGAATG GGGAAAGAGG TTTGCTTGAT CAAAAGGTGT
  GGGAAACCAG GACTTCCCTG AAGCTATGAT GCTTACTCCA CCTGGGCGCC AGGGGGTGGT
  CCTGCCTAAC CCCAAGTAGC CCAAAGAGGT CGGGGTGTGA GAGAGCCTGC TGCTGCGGAT
  ACCTCTCTGA ATCTTGGTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353207039	MGP_WTSI_2_16278986	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235459642					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353207039	MGP_WTSI_2_16278986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16362170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	134 bp distal
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	1045 bp distal
Rr552174	regulatory region 552174	1466 bp distal
Rr552175	regulatory region 552175	232 bp distal
Rr552176	regulatory region 552176	within coordinates
Rr552177	regulatory region 552177	102 bp proximal
Tssr16298	transcription start site region 16298	1703 bp downstream
Tssr16299	transcription start site region 16299	1338 bp downstream
Tssr16300	transcription start site region 16300	1306 bp downstream
Tssr16301	transcription start site region 16301	1276 bp downstream
Tssr16302	transcription start site region 16302	1260 bp downstream
Tssr16303	transcription start site region 16303	1068 bp downstream
Tssr16304	transcription start site region 16304	1043 bp downstream
Tssr16305	transcription start site region 16305	1002 bp downstream
Tssr16306	transcription start site region 16306	972 bp downstream
Tssr16307	transcription start site region 16307	873 bp downstream
Tssr16308	transcription start site region 16308	744 bp downstream
Tssr16309	transcription start site region 16309	689 bp downstream
Tssr16310	transcription start site region 16310	655 bp downstream
Tssr16311	transcription start site region 16311	617 bp downstream
Tssr16312	transcription start site region 16312	564 bp downstream