rs235465017 SNP Detail

Summary

• ID
  rs235465017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161576405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC TGTTTTGTCT GCCACCTACA
  Y
  CTCAGCATGT GCCTCACCCG CGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081476	CHEV_1_163678967	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235465017					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161576405 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	1191 bp downstream
Gm70711	predicted gene, 70711	within coordinates
Gm70716	predicted gene, 70716	1359 bp downstream
Rr396465	regulatory region 396465	311 bp downstream
Rr421832	regulatory region 421832	344 bp distal
Rr421833	regulatory region 421833	within coordinates
Rr421834	regulatory region 421834	1849 bp proximal
Rr421835	regulatory region 421835	1962 bp proximal
Tssr9696	transcription start site region 9696	1285 bp downstream