rs235476232 SNP Detail

Summary

• ID
  rs235476232
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC CTGGGAAGCA AGTGGCTGAA
  M
  CGGGTTCGAG GGATCTGTGG GGTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730636	CHEV_11_69414315	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235476232					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide			mRNA-UTR
				Noncoding-Transcript-Variant
Gm72066	predicted gene, 72066			within coordinates
Rr386229	regulatory region 386229			within coordinates
Rr450033	regulatory region 450033			1074 bp distal
Rr450034	regulatory region 450034			1203 bp distal
Rr450035	regulatory region 450035			151 bp distal
Tssr3544	transcription start site region 3544			109 bp upstream
Tssr102487	transcription start site region 102487			773 bp downstream
Tssr102488	transcription start site region 102488			350 bp upstream
Tssr102489	transcription start site region 102489			425 bp upstream
Tssr108712	transcription start site region 108712			795 bp upstream
Tssr108713	transcription start site region 108713			644 bp upstream
Tssr108714	transcription start site region 108714			576 bp upstream
Tssr108715	transcription start site region 108715			542 bp upstream
Tssr108716	transcription start site region 108716			238 bp upstream
Tssr108717	transcription start site region 108717			224 bp upstream
Tssr108718	transcription start site region 108718			160 bp upstream
Tssr108719	transcription start site region 108719			158 bp upstream
Tssr108720	transcription start site region 108720			142 bp upstream
Tssr108721	transcription start site region 108721			133 bp upstream
Tssr108722	transcription start site region 108722			55 bp upstream
Tssr108723	transcription start site region 108723			18 bp upstream
Tssr108724	transcription start site region 108724			21 bp downstream
Tssr108725	transcription start site region 108725			45 bp downstream
Tssr108726	transcription start site region 108726			140 bp downstream
Tssr108727	transcription start site region 108727			162 bp downstream
Tssr108728	transcription start site region 108728			206 bp downstream
Tssr108729	transcription start site region 108729			293 bp downstream
Tssr108730	transcription start site region 108730			325 bp downstream
Tssr108731	transcription start site region 108731			356 bp downstream
Tssr108732	transcription start site region 108732			417 bp downstream
Tssr108733	transcription start site region 108733			1639 bp downstream
Tssr108734	transcription start site region 108734			1930 bp downstream
Tssr108735	transcription start site region 108735			1997 bp downstream