rs235482854 SNP Detail

Summary

• ID
  rs235482854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124735085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCAGTC AGCGTGCCAG
  CCATGCCCAA CCTACAGCCA TGAAGTCAGC ACCCCCATCA CTCCAGTGGT GCCTTCTTCT
  GGGCTCCTTC TCTGGCCCCA AACCAGCAGC AACATCTCTC AGGACAAAGG ACACTAGAGA
  CAGGGTGATT TTTGGCAGCT GAAATTGGGA AGGCTAGAGA AAGGGAGGGA GGCAGGCTGG
  R
  AGCCCGGAAG AGCTGGAGCT GGAGTCTGGA TTGGGAGCCC TTAGTAGTTC ACCAGATTTG
  GAGGTGGGGG TAGAGAGCTT GTAGGGGGCC AGCCTAGCTC AGACCTAGTG GGTGGAGTGG
  GGGACACTGA GTGGGCAAAC TGCCTTTGTG GAAGGGAGGA GAACGGCTAG CCTAGTAGCC
  ACCCAGTAGG TCTTACACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369942303	MGP_WTSI_6_124708140	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235482854					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369942303	MGP_WTSI_6_124708140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124735085 () rs orientation: forward

Symbol	Name	Function Class
Atn1	atrophin 1	1635 bp upstream
Cpgi17967	CpG island 17967	615 bp distal
Eno2	enolase 2, gamma neuronal	1933 bp downstream
Rr132955	regulatory region 132955	1116 bp proximal
Rr145725	regulatory region 145725	within coordinates
Tssr63141	transcription start site region 63141	1759 bp upstream
Tssr63142	transcription start site region 63142	1595 bp upstream
Tssr63143	transcription start site region 63143	1354 bp upstream
Tssr63144	transcription start site region 63144	1275 bp upstream
Tssr63145	transcription start site region 63145	1239 bp upstream
Tssr63146	transcription start site region 63146	1224 bp upstream
Tssr63147	transcription start site region 63147	1147 bp upstream
Tssr63148	transcription start site region 63148	1114 bp upstream
Tssr63149	transcription start site region 63149	1091 bp upstream
Tssr63150	transcription start site region 63150	856 bp upstream