rs235486526 SNP Detail

Summary

• ID
  rs235486526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137743830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACAGCT GATACTTGTT
  ACAAGTCCAT GATGGCGTGT ATGGGCGTTC ATTCTCCTAG TTCCTCTACT TTAGGGCATG
  TTTGAAAATT TTCATAGCCG CTCGCTTTTG AAAACAGAGT GGGGAAAGGA GTTTCTCGTG
  AATTTACGGT GAAAACCAGA GACGCTGTGA CAAATCACAG CCAGTGGGTC ACATTGACTA
  Y
  GTATTTATGG ACAGTCAGGT ACCCAGAACA TGTCTGGCAC GTTCCTTGAG ACTCTTTTGG
  AGAACCTGCA AAAGCCTACA AGTAAGGGAA TCCCTGGCCT CCCGCAGGCT CCTCCTCTTT
  TTCTCCGCCC TCATGCCCCT CCCTCCGAGG AAGAGTTGCC TGGAACCTGG CAGGTGTAGG
  GTTAAAGCAA CCAGTTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884374	MGP_WTSI_5_138186796	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	C	C	C	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235486526					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	C	C	C	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884374	MGP_WTSI_5_138186796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137743830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	439 bp proximal
Gm57848	predicted gene, 57848	444 bp upstream
Gm68923	predicted gene, 68923	1416 bp upstream
Rr622970	regulatory region 622970	1036 bp distal
Rr622971	regulatory region 622971	within coordinates
Rr622972	regulatory region 622972	926 bp proximal
Rr622973	regulatory region 622973	1731 bp proximal
Tsc22d4	Tsc22 domain family, member 4	444 bp upstream
Tssr49366	transcription start site region 49366	183 bp upstream
Tssr49367	transcription start site region 49367	385 bp upstream
Tssr49368	transcription start site region 49368	399 bp upstream
Tssr49369	transcription start site region 49369	545 bp upstream
Tssr49370	transcription start site region 49370	615 bp upstream
Tssr49371	transcription start site region 49371	670 bp upstream
Tssr49372	transcription start site region 49372	787 bp upstream
Tssr49373	transcription start site region 49373	979 bp upstream
Tssr49374	transcription start site region 49374	1071 bp upstream
Tssr49375	transcription start site region 49375	1122 bp upstream
Tssr49376	transcription start site region 49376	1317 bp upstream
Tssr49377	transcription start site region 49377	1384 bp upstream
Tssr49378	transcription start site region 49378	1498 bp upstream
Tssr49379	transcription start site region 49379	1943 bp upstream