rs235487661 SNP Detail

Summary

• ID
  rs235487661
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48045472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACAAAC CCCCCCCCCA
  CCCCCGTGCC CTTCCTTCTT CCCCTCAGCC TGTCCCATCT GCCCCGCCTC TCTGTATCCA
  GCTTTCCTTT TCTGGAAACC TAGACATTCC CTAATAATAA ATAGTCCTCC ATATTGACCA
  GCCTGTTGAG TCATTTGTAT GTAGGGGGTG AGTATTGGGG GAGCTGGGCA AAGCTGTGCC
  W
  TGTCAGATTC CTTGGGTCTC GGGGAACTGT CAGAGTGGGA GACAGGGCAA GTTCCGCTTT
  GATTGACCTT AGTGGCCACA AGGTTTCCCT GTGGGTCACT CAGATGCCAA GTGAAATGGA
  GTTGGAAGCC AGGCTTGGAG ATAGGCCTGT ACCCTTCTGT GCTTGGAATC TATTCACAGA
  TTCCCTCTGA CGAGATAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353055	MGP_WTSI_17_47871496	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235487661					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353055	MGP_WTSI_17_47871496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48045472 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	69 bp downstream
Rr528107	regulatory region 528107	1993 bp proximal
Tssr145030	transcription start site region 145030	1582 bp downstream
Tssr145031	transcription start site region 145031	1574 bp downstream
Tssr145032	transcription start site region 145032	1489 bp downstream
Tssr145033	transcription start site region 145033	1487 bp downstream
Tssr145034	transcription start site region 145034	1476 bp downstream
Tssr145035	transcription start site region 145035	792 bp downstream
Tssr145036	transcription start site region 145036	763 bp downstream
Tssr145037	transcription start site region 145037	736 bp downstream
Tssr145038	transcription start site region 145038	717 bp downstream
Tssr145039	transcription start site region 145039	346 bp downstream
Tssr145040	transcription start site region 145040	312 bp downstream
Tssr145041	transcription start site region 145041	300 bp downstream
Tssr145042	transcription start site region 145042	249 bp downstream
Tssr145043	transcription start site region 145043	223 bp downstream
Tssr145044	transcription start site region 145044	210 bp downstream
Tssr145045	transcription start site region 145045	193 bp downstream
Tssr145046	transcription start site region 145046	142 bp downstream
Tssr145047	transcription start site region 145047	126 bp downstream
Tssr145048	transcription start site region 145048	106 bp downstream
Tssr148475	transcription start site region 148475	1497 bp upstream
Tssr148476	transcription start site region 148476	1470 bp upstream
Tssr148477	transcription start site region 148477	1437 bp upstream
Tssr148478	transcription start site region 148478	737 bp upstream
Tssr148479	transcription start site region 148479	685 bp upstream
Tssr148480	transcription start site region 148480	219 bp upstream
Tssr148481	transcription start site region 148481	183 bp upstream
Tssr148482	transcription start site region 148482	66 bp upstream