rs235513493 SNP Detail

Summary

• ID
  rs235513493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134213353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCGCCG ACCCCCATTT TCCCTACCGC
  GATCGGGCCG TGAAGAGTGG GGGGCGGGGC GGGGAAGACG TGGGGTTAGG CGACTTTCGC
  ACGCCAGGCG CGCACCAAAA TCTCGCTTTC GATTGGTTGT GACGGGGCGA GGAGGCGGGG
  R
  AAGCTGCGCC CGGTGCGTGC CGAGGTCACG CGCCACCTGA CGTACCTGCG CTGTGTTTAG
  AAACCCTTGA TTGGTTAGGG GAAGGGGCGG GGCCATCGCG GTTGCCTAGC AACGGCGCTC
  TGGCTCCACC TTCGGCGGCT GGCTTTGCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321694966	CHEV_5_134660384	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235513493					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134213353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16715	CpG island 16715	within coordinates
Gm73509	predicted gene, 73509	111 bp downstream
Gtf2ird2	GTF2I repeat domain containing 2	within coordinates
Rr110116	regulatory region 110116	1248 bp proximal
Rr124476	regulatory region 124476	within coordinates
Rr399398	regulatory region 399398	within coordinates
Tssr49084	transcription start site region 49084	468 bp downstream
Tssr53607	transcription start site region 53607	90 bp upstream
Tssr53608	transcription start site region 53608	75 bp upstream