rs235522624 SNP Detail

Summary

• ID
  rs235522624
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110368112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCCGCC ACCGGGCCCT
  GCCGCACAGC GCTCAGCCTG GTCCCCACCA GTCGCGGGCT CCTGCGGGGC GGGCACGGGC
  TGCAAGCGCG GCCTGGTCGG GTCCAGCTCC ACGTACCGGG CCGCGCAGGC GTCAGTGCGC
  TGCTGCCGCT GCCCTGTGCG CCCTGCCCGG CGCGGCACCT GCGCTCCAGC CCGGCAGCCG
  S
  CCCCCATGGC CCTGCCCTCC GAATCCGGTG AGTGCGCGCG ATGCTGCGCC GCTGACCTTG
  GGCCGGCGCT CTGTGCCCAG TCCCCTCTGT GCTCAGAGAC CAGAACCTCC GCAGCTCCCA
  CCTCCAGAGC CTGTTCCCCG TCCCTACCCA GCGGTGGCCT GGGTCCTGGC CTCTGGTGAG
  CCTGCAGCAC CTCTGGTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398777	CHEV_7_117912419	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235522624					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110368112 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	within coordinates
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	within coordinates
Rr653308	regulatory region 653308	689 bp distal
Rr653309	regulatory region 653309	within coordinates
Rr653310	regulatory region 653310	17 bp proximal
Rr653311	regulatory region 653311	1757 bp proximal
Tssr68503	transcription start site region 68503	805 bp downstream
Tssr68504	transcription start site region 68504	778 bp downstream
Tssr68505	transcription start site region 68505	749 bp downstream
Tssr68506	transcription start site region 68506	712 bp downstream
Tssr68507	transcription start site region 68507	271 bp downstream
Tssr68508	transcription start site region 68508	58 bp downstream
Tssr68509	transcription start site region 68509	1721 bp upstream
Tssr74265	transcription start site region 74265	396 bp downstream