rs235523936 SNP Detail

Summary

• ID
  rs235523936
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161079247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTACT ATGAGCATCT
  AGTAGTTGGC TGAATGACTG ACTACTCAGC CAACCTGGGT TTCAGAAGTT TTTCAGGATG
  TGGCAAGAAC CAGACTTGTG ACGTGGGCTA AGTCAGAGGA AGTGGCTTTC TTATTGCAGC
  AAACATTCTG TACCAATGTC AATAAGAGGG CAATGGAAAG AACCGTTTTT TTTTTTTTTT
  W
  AATTTTGCCT CCCCATTCCT GGAGTTCCTT ATAAAATGCT CAACACATTA TTCCTAAAGT
  TTAAATATAG GTTTCACAAC AGGCTTCTTG AGATCGAGTG TATGCAAGTG AATTCCCACC
  TGAAGAAATG GGACATTTTG ATCCACTGAC TTCCTATTTC CTAAGCACAA AGTGGAGAAA
  GATGCCTGCC CTTATTAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352143824	MGP_WTSI_1_163181808	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235523936					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352143824	MGP_WTSI_1_163181808	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161079247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	247 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	467 bp upstream
Rr372334	regulatory region 372334	955 bp downstream
Rr396460	regulatory region 396460	328 bp downstream
Rr396461	regulatory region 396461	within coordinates
Rr421776	regulatory region 421776	925 bp distal
Rr421777	regulatory region 421777	523 bp distal
Rr421778	regulatory region 421778	within coordinates
Rr421779	regulatory region 421779	1033 bp proximal
Tssr14577	transcription start site region 14577	768 bp upstream
Tssr14578	transcription start site region 14578	538 bp upstream
Tssr14579	transcription start site region 14579	533 bp upstream
Tssr14580	transcription start site region 14580	491 bp upstream
Tssr14581	transcription start site region 14581	149 bp upstream