rs235554226 SNP Detail

Summary

• ID
  rs235554226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102285803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCATCAT GTGCTTGGCT
  CTAGTGAACC TCCAGGCAGC TTTAGGCAAC CCATTCCTTG CTGCATCTCC ACCTGGCCTC
  CTTCATTCTG ATTTTTGCTG AGTTACATAC TCTTCTCAAA GACAGAGATG CCCAAGTGCA
  CTTTTTTTTT TGATATTTCT ACAAAAGTAA GAGAAAATGT GTTGGTGCCC ACAAGTCAAC
  Y
  CCTCCTTCCA GGAGATGGAA GCAAGATTGT AAGTTTAAGG CCAGCCTGAG TTAAATGGTG
  AGACCCTGTC TTAATAATAA AGCAAGACAC TCCAAAATAA ACAGAAAGAA GAGAGGGAAA
  AGAGGGTCCT TGAAGTTTAC TCTGATCCCA AAGTGATTCC ATGACTCCAA TGTTGGCCAA
  TACTACTGAC CTTGCCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320437774	CHEV_2_102295615	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235554226					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102285803 () rs orientation: forward

Symbol	Name	Function Class
Rr561697	regulatory region 561697	1620 bp distal
Rr561698	regulatory region 561698	1867 bp distal