rs235563441 SNP Detail

Summary

• ID
  rs235563441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26498412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCAGAG TTCCAGCGTC
  TCGGTGGATG TGTCACAAGA ACACTGATGC CATCCTTGCC ACCTGTAAAT AAAGCAGCCT
  GTGAATGTTT CATGGGCTTG TGCTTAAAAA TAAATGAAGT GAGGAGGTAC AGGGGTTCCT
  GCCTTGGCAG GAAGTGGGTA TCCACAAATC CCCTGGGGAA CCGAGGGTAA GGGAGGGTCA
  R
  GCCAGGGGAT ATGTTCACAT CTGGAAGATC ATACCTGGGT GAGTACTGTT TCAAGCTCTG
  CGTCTCCAGG CTGGGAGTGG GTTACTTTTC AAATTTAAAC AGGAAAGAGA TCATTTCAAT
  TTACTAATCG GAGAAGATCC AGTCGATCAT GATCATGATG ACATCTGGAG GGTCAGGCAG
  GCAGACACAT TGCTTCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353433545	MGP_WTSI_2_26463920	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235563441					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353433545	MGP_WTSI_2_26463920	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26498412 () rs orientation: forward

Symbol	Name	Function Class
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	within coordinates
Gm57466	predicted gene, 57466	1191 bp upstream
Rr42176	regulatory region 42176	1012 bp distal
Rr48585	regulatory region 48585	589 bp proximal
Rr372944	regulatory region 372944	1859 bp upstream
Tssr16813	transcription start site region 16813	1362 bp upstream
Tssr16814	transcription start site region 16814	1401 bp upstream
Tssr23142	transcription start site region 23142	575 bp upstream
Tssr23143	transcription start site region 23143	399 bp upstream
Tssr23144	transcription start site region 23144	327 bp upstream
Tssr23145	transcription start site region 23145	237 bp upstream
Tssr23146	transcription start site region 23146	207 bp upstream
Tssr23147	transcription start site region 23147	139 bp upstream
Tssr23148	transcription start site region 23148	219 bp downstream
Tssr23149	transcription start site region 23149	270 bp downstream