rs235568437 SNP Detail

Summary

• ID
  rs235568437
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:108534778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCCCC AACCCCCACC
  TCACTCCTCT GATTTTTCAT TTGGACACAG ACTGTTGTTG TATTATGTGT CCGTCGCTAA
  CCTTCAAGAT GAAGAGAAGC CAACTATCTG AAGAGGTTGG CATCCCAGGC TTACGGGAGG
  GTGGCAGGAA GTGAAGCCCT CAGTGGTTTG GTCACCTGCC TGTGGGGCAG GACTCACAGG
  S
  AGCTGAGAAG ACTCCTCCAG GCTGGTCTCT GCAGAGGCCC ATGACCAGCA CTCATTCCAG
  AGCCGAGGCA GGGGAAACTA GAGAACATGC CTGCTTTGTG GAAAGTAGTA GACCTGAGTT
  GGGCCTGGAC AGCAGATTGA GGGCTGAAGC AGAGCACCTG CAAAGGGGAG GCAGAGAGAG
  GCAGAGAGTG GACGCAAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388647	CHEV_7_116079085	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235568437					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108534778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	662 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	Intron
Rr400539	regulatory region 400539	1113 bp downstream
Rr652952	regulatory region 652952	1144 bp distal
Rr652953	regulatory region 652953	1401 bp distal
Tssr68456	transcription start site region 68456	1141 bp downstream
Tssr68457	transcription start site region 68457	1043 bp downstream