rs235570426 SNP Detail

Summary

• ID
  rs235570426
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65020448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCACGTCG CCTCCCAGCG CGAGCCGGAG CCAGGCACCG
  GCAGCCGTGC ACCTGCCCGG GCGGCAGGCG CACCCCCAGC CCGCCCTCCC GCCTTCCCTC
  M
  CCGCCCCGCC GCGGTCGCCC CCGGCTGCCG CCGCGGGGAG GGCGGGGCGA GGCTCCCCCG
  CCGCCCCCCG CCGCCCAGCC CGCCGCCCGG CTGGCCGAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss371680324	MGP_WTSI_7_72515586	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	C	A	C	C	A	C	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235570426					SNP	A	A	A	A	A	A	A	A	C	A	C	C	A	C	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371680324	MGP_WTSI_7_72515586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65020448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	within coordinates
Gm57226	predicted gene, 57226	603 bp upstream
Rr647944	regulatory region 647944	1226 bp distal
Rr647945	regulatory region 647945	within coordinates
Rr647946	regulatory region 647946	305 bp proximal
Rr647947	regulatory region 647947	614 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	722 bp upstream
Tssr72804	transcription start site region 72804	174 bp downstream
Tssr72805	transcription start site region 72805	189 bp downstream
Tssr72806	transcription start site region 72806	208 bp downstream
Tssr72807	transcription start site region 72807	510 bp downstream