rs235573641 SNP Detail

Summary

• ID
  rs235573641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52150318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGGGAA CTCTCAAAAG
  GGCAAAGGGT CGTCATTTTT TCTCCAATCC TCCCATAAGG ATTCATATTT GCCTCAAAGA
  TCTATGATGG TCAGACTTCC TTCCTAGCCA GCCTTTGCCT GGAACTCTCA AAGGAGGTTT
  GCACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACAGGCAACT
  R
  CCCTATCGGA TCATGATGGA GTTTGGAAGC TGAGTTTGTT AGACAGTTAG CCTGTTCTAG
  TTCAGGGAAG AGGACCAACC GCCTCCAAAT GAACCCTATA AGGTCAAGAA GAGTGTGGAA
  GAGAAAACTT TTGAAGAAGT TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCACTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308278	MGP_WTSI_6_52123337	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235573641					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308278	MGP_WTSI_6_52123337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52150318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17417	CpG island 17417	410 bp distal
Cpgi17418	CpG island 17418	1855 bp proximal
Gm15050	predicted gene 15050	within coordinates
Gm28308	predicted gene 28308	within coordinates
Gm57749	predicted gene, 57749	1841 bp upstream
Hoxa3	homeobox A3	within coordinates
Rr630350	regulatory region 630350	447 bp distal
Rr630351	regulatory region 630351	within coordinates
Rr630352	regulatory region 630352	1551 bp proximal
Rr630353	regulatory region 630353	1908 bp proximal
Tssr56504	transcription start site region 56504	513 bp downstream
Tssr56505	transcription start site region 56505	451 bp downstream
Tssr56506	transcription start site region 56506	387 bp downstream
Tssr56507	transcription start site region 56507	1836 bp upstream