rs235575819 SNP Detail

Summary

• ID
  rs235575819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48043331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCAGTCT AAAGGAAACA
  CAGACTGTCC TCAGGAACCC CAGTCAGAGA TACAGAGCGT CTGTCTTCAG GAAGCCTCCG
  TTGCAAAATG AGGGGAGGAG GTGTTTTCCT CTGAAAATGG CTAACCGACC ATGGGAATTG
  GCTGTTCACC CAGACTCTTC TTCCTTTGGT CCTCTGTAGC CAGCAGGGGT CTAACGGCGG
  R
  CAGATTGTGT TCGGTGGCGT GGACGAGAAC CTGTACACTG GCGAGCTCAC CTGGATTCCT
  GTCACCCAGG AGCTTTACTG GCAGATCACC ATTGACGAGT GAGTCTGGTC GGGCCTCAGA
  CATTCTAAGC CATCCACCCA CCCATCCCGG CACTGCTGGT AGAGGGTGGG TGGGAGACCC
  TCCTCCAAAG TCATAGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353018	MGP_WTSI_17_47869355	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235575819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353018	MGP_WTSI_17_47869355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48043331 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1676 bp distal
Tssr5149	transcription start site region 5149	918 bp downstream
Tssr145017	transcription start site region 145017	1801 bp downstream
Tssr145018	transcription start site region 145018	1795 bp downstream
Tssr145019	transcription start site region 145019	1764 bp downstream
Tssr145020	transcription start site region 145020	1735 bp downstream
Tssr145021	transcription start site region 145021	1705 bp downstream
Tssr145022	transcription start site region 145022	1678 bp downstream
Tssr145023	transcription start site region 145023	1640 bp downstream
Tssr145024	transcription start site region 145024	1538 bp downstream
Tssr145025	transcription start site region 145025	1175 bp downstream
Tssr145026	transcription start site region 145026	935 bp downstream
Tssr145027	transcription start site region 145027	within coordinates
Tssr145028	transcription start site region 145028	13 bp upstream
Tssr145029	transcription start site region 145029	54 bp upstream
Tssr145030	transcription start site region 145030	548 bp upstream
Tssr145031	transcription start site region 145031	564 bp upstream
Tssr145032	transcription start site region 145032	572 bp upstream
Tssr145033	transcription start site region 145033	653 bp upstream
Tssr145034	transcription start site region 145034	655 bp upstream
Tssr145035	transcription start site region 145035	1345 bp upstream
Tssr145036	transcription start site region 145036	1353 bp upstream
Tssr145037	transcription start site region 145037	1397 bp upstream
Tssr145038	transcription start site region 145038	1407 bp upstream
Tssr145039	transcription start site region 145039	1772 bp upstream
Tssr145040	transcription start site region 145040	1796 bp upstream
Tssr145041	transcription start site region 145041	1833 bp upstream
Tssr145042	transcription start site region 145042	1851 bp upstream
Tssr145043	transcription start site region 145043	1906 bp upstream
Tssr145044	transcription start site region 145044	1923 bp upstream
Tssr145045	transcription start site region 145045	1933 bp upstream
Tssr145046	transcription start site region 145046	1952 bp upstream
Tssr145047	transcription start site region 145047	2000 bp upstream
Tssr148467	transcription start site region 148467	1774 bp upstream
Tssr148468	transcription start site region 148468	1737 bp upstream
Tssr148469	transcription start site region 148469	1643 bp upstream
Tssr148470	transcription start site region 148470	21 bp downstream
Tssr148471	transcription start site region 148471	40 bp downstream
Tssr148472	transcription start site region 148472	56 bp downstream
Tssr148473	transcription start site region 148473	73 bp downstream
Tssr148474	transcription start site region 148474	92 bp downstream
Tssr148475	transcription start site region 148475	621 bp downstream
Tssr148476	transcription start site region 148476	649 bp downstream
Tssr148477	transcription start site region 148477	680 bp downstream
Tssr148478	transcription start site region 148478	1392 bp downstream
Tssr148479	transcription start site region 148479	1430 bp downstream
Tssr148480	transcription start site region 148480	1908 bp downstream
Tssr148481	transcription start site region 148481	1938 bp downstream