rs235585085 SNP Detail

Summary

• ID
  rs235585085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170898132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTTACA CGGCTGCCCC
  GAGGCCGGCC GCACAGTCCC TTCTGGATGC CCTTTCGGAC TGGTGCCCCC TGGCGCCCAG
  GAATCGCCTT TGGTGGCAGG GATGGGGTGG AGTCGGGTCG GAATAAGCAC TGTGTGTGCC
  GCCCGCAGGA TCTGCTGGCA CCTCTCCCCA TGTTACCCAT TGAGGTGGAG CACAGTCCTC
  Y
  GCTCAGCACT CAGGATCCGG CACTGTGCTG GCAGGGTCAG GACGGAGGCG ACCGGGCAGG
  GCACGCATCC GCTGGGCAAA GGTTTCTTTC CCGACTCACA TCCGCCACAG TGGCTTTACA
  ACTCCCCGAA TATCCTCTGC TCGCCCAAAC CGCTCCGGGG GCTTGCGTGG GAAATCGTGG
  CTCGCCTCGC CCACAATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	CAST/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss352379501	MGP_WTSI_1_173000694	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	T	C	T	T	C	C	C	T	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	CAST/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs235585085					SNP	T	T	C	C	T	C	T	T	C	C	C	T	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352379501	MGP_WTSI_1_173000694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170898132 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1663 bp downstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	1229 bp downstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1771 bp downstream
Rr423202	regulatory region 423202	120 bp distal
Rr423203	regulatory region 423203	1033 bp proximal
Rr423204	regulatory region 423204	1916 bp proximal