rs235595830 SNP Detail

Summary

• ID
  rs235595830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174316084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAGCCAG GTTAATTTAG
  GAGGGTGGAT CATTTTTTTT TTTAAAATAG CCAAAGCAGT TTATATTTTA AAAGATAGAA
  AAATTATATT AGACAGGAAG GAAATAATAT GGTTGGTAGC TGCTAAGTGT AATTTGTTTT
  ACCTGGGGGA TTATATATAT ATATATTCAG TACTTTGAGT GATTTCTTGG GGAGATAATG
  Y
  TTTAAGGGCT GCTGAGAGGG CCCCAGCCTT TGTTAAGATG TGAAGTTAGT GCTGTGTATT
  ACTGGCTCTA GTGCAGTCAC TACAGAACAG TCAGTCCCTG CTGCCCTAGA GCTTCATGAA
  GCTGTTCACC AGCTAGCTGG CCAGCCTCCT CTGCCTCCTC CTCCTCCTCC TCCTCCTCTT
  CCTCTTTTCT CTTTTCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356690981	MGP_WTSI_2_174299792	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235595830					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356690981	MGP_WTSI_2_174299792	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174316084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	819 bp distal
Gm38546	predicted gene, 38546	182 bp downstream
Gm52540	predicted gene, 52540	1755 bp downstream
Prelid3b	PRELI domain containing 3B	1350 bp upstream
Rr397557	regulatory region 397557	1113 bp downstream
Rr572133	regulatory region 572133	1404 bp distal
Rr572134	regulatory region 572134	1668 bp distal
Rr572135	regulatory region 572135	1301 bp distal
Rr572136	regulatory region 572136	1273 bp distal
Rr572137	regulatory region 572137	1096 bp distal
Rr572138	regulatory region 572138	306 bp distal
Tssr28035	transcription start site region 28035	1355 bp upstream
Tssr28036	transcription start site region 28036	1272 bp upstream