rs235597838 SNP Detail

Summary

• ID
  rs235597838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88901318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttatttatt atataagtaa gtacactgta
  gctgtcttca gacactccag aagagggaat cagatctcat tgcggatggt tgtaagccac
  gatatgtggt tactgggaat tgaactcggg gccttcagaa gagcagtcag tgctcttaac
  Y
  gctgagccat ctctccagcc ccAGGTGGAG GCTTTTTGCT ACTCCAGGGA GCTCAGTCCT
  ATGCCTAGAA ACTACTGTGT TCCGTGAGAA AGGATTCAAA GCCCTTGTCT GAGCCCCCTT
  CTTAAAGTTC TTAAAAGAGC ACTCCAGCTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783763	CHEV_11_88871806	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235597838					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88901318 () rs orientation: forward

Symbol	Name	Function Class
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	401 bp upstream
Tssr104067	transcription start site region 104067	477 bp upstream