rs235600285 SNP Detail

Summary

• ID
  rs235600285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129158639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTAATTTGT
  GGAAAGACTA CTGAATTTTG AGAAAGTAAG ATTGACATCT ATCAAAATAC AAAATTCCCA
  ACAAATGCTA ATGTTTATCA CTTAAACCAA GTATTCTGAA ATAATAATAA TAATAATAAT
  AATAATAAAT TATAATAAAT TATTATTACT GAGGATGATG ATGACTGACT GACTGATTGA
  Y
  TGATTGATTG ATTCTTTGGC AAAGTCTCAT ACTTTACCCC AAGCTGGCCT GGAACTCCTG
  CTCCCTCTGC CTCAGCAGGG TTGACTTTTT AAAATCAAAT ACACAAATAT TTAGCCATTG
  GAAACATTTC CTGAGAATGT GGAGCTTCTG TCTCAAGTGC AGCTGTTGCA TAGCTAGCTG
  CAGGCATTTT GAAGCCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045197	MGP_WTSI_6_129131694	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235600285					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045197	MGP_WTSI_6_129131694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129158639 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	1311 bp downstream
Rr368193	regulatory region 368193	287 bp downstream
Tssr59096	transcription start site region 59096	1046 bp downstream
Tssr59097	transcription start site region 59097	1020 bp downstream
Tssr59098	transcription start site region 59098	737 bp downstream
Tssr59099	transcription start site region 59099	708 bp downstream
Tssr59100	transcription start site region 59100	663 bp downstream
Tssr59101	transcription start site region 59101	369 bp downstream
Tssr59102	transcription start site region 59102	315 bp downstream
Tssr59103	transcription start site region 59103	176 bp upstream
Tssr59104	transcription start site region 59104	246 bp upstream
Tssr59105	transcription start site region 59105	1002 bp upstream
Tssr59106	transcription start site region 59106	1026 bp upstream
Tssr59107	transcription start site region 59107	1256 bp upstream
Tssr59108	transcription start site region 59108	1322 bp upstream
Tssr59109	transcription start site region 59109	1435 bp upstream
Tssr63546	transcription start site region 63546	1157 bp downstream