rs235606954 SNP Detail

Summary

• ID
  rs235606954
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50594030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGCGTG GTGGTGCACA
  CCTTTAATAC CAGCACTTGG GAGGCAGAGG CAGGCGGATT TCTGAGTTCA AGGCCAGCCT
  GATCTACAGA GTGAGTTCCA GGACAGCCAG AGTTACACAC AGAGAAACCC TGTCTCAGAA
  AAAAAAAAAA AAAAAGTAAA ACTGTATTTT TTTACTATAT ACATATATAT GTAGTTTTAC
  W
  ATTTATATAT ATAGTTTATG TACATGTATA TATACACACA TATATGTATA TACATGTATG
  TATGTATATA TATGTATATA TATATATATA TATATATATA TATATATATA TATATATATA
  TATATATGGA GAGAGATACA TTGGGTTGTA CTGAGAATAA ATAATACTTA ACAAATATAT
  CAAATTTACT ATAATAGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	I/LnJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
ss353933621	MGP_WTSI_2_50559538	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	I/LnJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
rs235606954					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353933621	MGP_WTSI_2_50559538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50594030 () rs orientation: forward

Symbol	Name	Function Class
Rr556762	regulatory region 556762	634 bp distal
Rr556763	regulatory region 556763	326 bp proximal