rs235616502 SNP Detail

Summary

• ID
  rs235616502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113395158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAG GAGTAGGGAA CAGGAGAGAG
  Y
  CAGTATTCTT TGTTCTCTTG GCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324175513	CHEV_12_114669749	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235616502					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113395158 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1000 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	1705 bp upstream
Tssr115504	transcription start site region 115504	1298 bp downstream
Tssr118017	transcription start site region 118017	1696 bp upstream
Tssr118018	transcription start site region 118018	1153 bp upstream
Tssr118019	transcription start site region 118019	1097 bp upstream
Tssr118020	transcription start site region 118020	1052 bp upstream
Tssr118021	transcription start site region 118021	935 bp upstream
Tssr118022	transcription start site region 118022	906 bp upstream
Tssr118023	transcription start site region 118023	743 bp upstream