rs235616978 SNP Detail

Summary

• ID
  rs235616978
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70169280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAACAC AGCAGTCATA
  AGTGCGACAC CAAAAGCACA AACAGGGCGC CAGCACTGGG CGGTGACGTC ACCAACCCGG
  AAGCTACCCC CTGATTAGGA GGAGTCTTCC GCTCCCCGCG CTCTGCGCAG ACATGGCTGG
  AAAAGCGGAA GTGATTAGAG TCCTCCGAGA CAAGCACTGG CCAGTGACGG GGCCCACGTC
  K
  CCCAGTGGAA CGCACAGGGT GTCCGCTCGG CCGGCCGGTC CCACCGCTCC CCCAACCCCG
  GGAAGGACCT ATCACCCCGG CTCACGCGGC TCAGCCGACC GCTCCTCCCC ATCCGGGGAC
  AGCGGCCCCG CGCTCACCAT GGCGCGGTTG CTGAGCTCGC CTGCGCTCCC CCTACAGCTC
  CCGGCAGCGG CGATCACACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375088417	MGP_WTSI_8_72240529	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235616978					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375088417	MGP_WTSI_8_72240529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70169280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20415	CpG island 20415	within coordinates
Gm51532	predicted gene, 51532	522 bp upstream
Gm64048	predicted gene, 64048	within coordinates
Rr186712	regulatory region 186712	within coordinates
Rr400882	regulatory region 400882	within coordinates
Rr400883	regulatory region 400883	235 bp upstream
Tssr77669	transcription start site region 77669	41 bp downstream
Tssr81531	transcription start site region 81531	206 bp upstream
Tssr81532	transcription start site region 81532	138 bp upstream
Tssr81533	transcription start site region 81533	197 bp downstream
Tssr81534	transcription start site region 81534	220 bp downstream
Zfp869	zinc finger protein 869	within coordinates