rs235620812 SNP Detail

Summary

• ID
  rs235620812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35251726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCTGGC CCCAGCAGGA
  CCCGGCGTGG CCGCGCGGGT CCCCGGGAGC CGGACGGGGC GGGGCCTTCC GGGGCAGCGC
  CCTGAGACTC ACCTGAGCTG GGAGCGGTGA CTCACCTGCC CTCCGCCCGC CCGTCCCCGC
  CGCAGGCTGT TCCCTGAGTC TCCTCCCCTC CTTCCCCTCG TGGGTTCGGG TCTGCGTGCC
  Y
  GGAGGCCAAA CCAAAAGGAC TTCTGGGGGT CCCGGCCTGG AGTTGCCAGG CTACCTTCCG
  GGTGGGAGGC TCTCCCTAGA AAGCGCCGGC TGCGCCAGGC CGGGACCGGC GGTATGGAGG
  CCGCGGGAGG CGCCGGGAAG AGCGCGCGGA GGGAGGTGCC GGGAAGGGCG GGCGCGGCGC
  GGGGCGGGCC GGGGGCGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400253729	MGP_WTSI_18_35278327	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235620812					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400253729	MGP_WTSI_18_35278327	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35251726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	within coordinates
Ctnna1	catenin alpha 1	229 bp upstream
Gm46617	predicted gene, 46617	within coordinates
Tssr150509	transcription start site region 150509	207 bp upstream
Tssr150510	transcription start site region 150510	234 bp upstream
Tssr150511	transcription start site region 150511	269 bp upstream
Tssr150512	transcription start site region 150512	748 bp upstream
Tssr150513	transcription start site region 150513	1133 bp upstream
Tssr150514	transcription start site region 150514	1156 bp upstream
Tssr150515	transcription start site region 150515	1559 bp upstream
Tssr152859	transcription start site region 152859	126 bp downstream