rs235622647 SNP Detail

Summary

• ID
  rs235622647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164287543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGCCACT GTCTCTAGGC
  AGAACTTACA TTGTGGAGGG GATTCCGCAG ACCAGACCAC TGGGAGGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ACCTCATATA TATATGAGGG AGGAAACCCC
  GTGGGCAGAA TCAGGAAAAA AAAAACCATA AGGAATAAGT AGGGTGTAAG TAGCTTCAAA
  R
  GGGATGAGAC TTGGCTGGAG TTTGATGGTT TCTGCCTATA ATCCCAGACT GGAGATAGGC
  AGGAGGATTA CACATCTGAG GAAGAAAGAA AAGTGAGTAA GAGGACTCTT AAGACTGATG
  CGGTGACCAT TCCTCATAGC CAGTGTACCT CAAACCCCCA GAACAGTTTG CAAACAGTTC
  ATCGTGGCAG GTTTTAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352216977	MGP_WTSI_1_166390105	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235622647					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352216977	MGP_WTSI_1_166390105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164287543 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	1619 bp upstream
Cpgi945	CpG island 945	898 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Gm70492	predicted gene, 70492	1228 bp upstream
Rr422212	regulatory region 422212	1864 bp distal
Rr422213	regulatory region 422213	1630 bp distal
Rr422214	regulatory region 422214	1714 bp distal
Rr422215	regulatory region 422215	1459 bp distal
Rr422216	regulatory region 422216	1550 bp distal
Rr422217	regulatory region 422217	1239 bp distal
Rr422218	regulatory region 422218	738 bp distal
Rr422219	regulatory region 422219	445 bp proximal
Rr422220	regulatory region 422220	1911 bp proximal
Tssr9788	transcription start site region 9788	1444 bp downstream
Tssr9789	transcription start site region 9789	1427 bp downstream
Tssr14746	transcription start site region 14746	1962 bp upstream
Tssr14747	transcription start site region 14747	1611 bp upstream
Tssr14748	transcription start site region 14748	1237 bp upstream
Tssr14749	transcription start site region 14749	865 bp downstream
Tssr14750	transcription start site region 14750	880 bp downstream