rs235627989 SNP Detail

Summary

• ID
  rs235627989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAAAAC CAGGGGCCAG
  CTGGTGCTGT AACGCAGTCC TGGGATATTT GGCCTAGCAA GCCTAAGGCC CTGGGTTCCA
  TACCCATTGA CATGGGGATG TGGACCACTT TATCTGGCTC TTCTTGTGAG AAAGAATACG
  TTTGAAGGGG ATGTCTCATG GCCTTGTTGC TCTGCTTTGT AAGTGAGGAT GCTGGGATTC
  M
  GAAAGGCAGA AACGACTCGC TCTCAGTCAT GCTGCTTACC CTTTCAAATG TCCACCGACT
  TCATTTATGC TTCAGAATGA AATAAAGGAG GGGCCCAGGG TTGAGAATCA GTGGATTACA
  GAATTAAAGC AAAACTGTCA AATAGGATGC TGGAGATTTT CGTTCATCTT CCTCCCTGAA
  GTCTCTCCCT TCCCCCCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530183	MGP_WTSI_5_123441037	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235627989					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530183	MGP_WTSI_5_123441037	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129091 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1495 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1758 bp upstream
Tssr48730	transcription start site region 48730	1776 bp downstream
Tssr48731	transcription start site region 48731	1747 bp downstream
Tssr48732	transcription start site region 48732	1713 bp downstream
Tssr48733	transcription start site region 48733	1662 bp downstream
Tssr48734	transcription start site region 48734	1416 bp downstream
Tssr48735	transcription start site region 48735	1289 bp downstream
Tssr48736	transcription start site region 48736	1266 bp downstream
Tssr48737	transcription start site region 48737	1085 bp downstream
Tssr48738	transcription start site region 48738	259 bp downstream
Tssr48739	transcription start site region 48739	248 bp downstream
Tssr48740	transcription start site region 48740	203 bp downstream
Tssr48741	transcription start site region 48741	164 bp downstream
Tssr53171	transcription start site region 53171	1948 bp upstream
Tssr53172	transcription start site region 53172	1917 bp upstream
Tssr53173	transcription start site region 53173	1748 bp upstream
Tssr53174	transcription start site region 53174	1690 bp upstream
Tssr53175	transcription start site region 53175	738 bp upstream
Tssr53176	transcription start site region 53176	621 bp upstream
Tssr53177	transcription start site region 53177	565 bp upstream
Tssr53178	transcription start site region 53178	533 bp upstream
Tssr53179	transcription start site region 53179	499 bp upstream
Tssr53180	transcription start site region 53180	455 bp upstream