rs235628127 SNP Detail

Summary

• ID
  rs235628127
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48044079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCAGCTT CCTTATTGGC
  AACCAGGCCT CTGGCTGGTG CTCCTCCTCT GGCTGCCAAG GCATTGTAGA CACAGGCACC
  TCTCTGCTCG TCATGCCTGC CCAGTACCTG AATGAACTTC TGCAGACCAT AGGAGCCCAG
  GAAGGAGAGT ATGGACAGGT GAGTCTGGGA AGGCCATCCT GTGTGTGTGT GTGTGTATGC
  A
  TGCTCACATA TATCTTTGGG TACACAAAAA TAGCCAAATC CTTGGCCAGG CTTTTAGCTA
  TTGAAGGAAC TGGTGGGAGT GGCCCTGGTA GTATAGCAAA GCAAGAATTT CTTCTGAGCC
  AAAGTCACCT TGAAATCTGG ATTGAACACT GTCTGGACTT TAAGATTGGA GGAAAGTAAT
  AAGAAGACGG AGGCCACACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353035	MGP_WTSI_17_47870103	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235628127					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353035	MGP_WTSI_17_47870103	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48044079 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Tssr5149	transcription start site region 5149	1666 bp downstream
Tssr145025	transcription start site region 145025	1923 bp downstream
Tssr145026	transcription start site region 145026	1683 bp downstream
Tssr145027	transcription start site region 145027	742 bp downstream
Tssr145028	transcription start site region 145028	701 bp downstream
Tssr145029	transcription start site region 145029	684 bp downstream
Tssr145030	transcription start site region 145030	189 bp downstream
Tssr145031	transcription start site region 145031	181 bp downstream
Tssr145032	transcription start site region 145032	96 bp downstream
Tssr145033	transcription start site region 145033	94 bp downstream
Tssr145034	transcription start site region 145034	83 bp downstream
Tssr145035	transcription start site region 145035	597 bp upstream
Tssr145036	transcription start site region 145036	605 bp upstream
Tssr145037	transcription start site region 145037	649 bp upstream
Tssr145038	transcription start site region 145038	659 bp upstream
Tssr145039	transcription start site region 145039	1024 bp upstream
Tssr145040	transcription start site region 145040	1048 bp upstream
Tssr145041	transcription start site region 145041	1085 bp upstream
Tssr145042	transcription start site region 145042	1103 bp upstream
Tssr145043	transcription start site region 145043	1158 bp upstream
Tssr145044	transcription start site region 145044	1175 bp upstream
Tssr145045	transcription start site region 145045	1185 bp upstream
Tssr145046	transcription start site region 145046	1204 bp upstream
Tssr145047	transcription start site region 145047	1252 bp upstream
Tssr145048	transcription start site region 145048	1284 bp upstream
Tssr148470	transcription start site region 148470	716 bp upstream
Tssr148471	transcription start site region 148471	694 bp upstream
Tssr148472	transcription start site region 148472	680 bp upstream
Tssr148473	transcription start site region 148473	666 bp upstream
Tssr148474	transcription start site region 148474	648 bp upstream
Tssr148475	transcription start site region 148475	104 bp upstream
Tssr148476	transcription start site region 148476	77 bp upstream
Tssr148477	transcription start site region 148477	44 bp upstream
Tssr148478	transcription start site region 148478	644 bp downstream
Tssr148479	transcription start site region 148479	682 bp downstream
Tssr148480	transcription start site region 148480	1160 bp downstream
Tssr148481	transcription start site region 148481	1190 bp downstream
Tssr148482	transcription start site region 148482	1321 bp downstream