rs235632548 SNP Detail

Summary

• ID
  rs235632548
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4167531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTTCGTTT GCCCTCCTCC CTCAGACCCA
  AGAGACTAGC CCCCAGAATC TGGCAACCCC CGGAAGTTCC TTCTTACCTG CACCAGGAAT
  AAGCTTCAGC CCCTCTCGGG GGCCATGGCA GCCTACCAAC CAAGCACCGA GTCAACGCCC
  W
  GTCAGCCAAG CTGGTCTCTT GTCCCGGGTT GAGAGGGTTA AGCCATAGGC CCCTCCCAGC
  CTTCCTTAGT CCCTAAAAGT TTGCCTCTAG GATTTAAAGG ACTAGAAAGC CTTGATGGTA
  GAAAAGCTAA AGGCCCTTTG AAGGGATTGT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093640	CHEV_7_4116134	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235632548					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4167531 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	within coordinates
Rr641923	regulatory region 641923	670 bp distal
Rr641924	regulatory region 641924	within coordinates
Rr641925	regulatory region 641925	318 bp proximal
Rr641926	regulatory region 641926	1819 bp proximal
Tssr70452	transcription start site region 70452	266 bp upstream
Tssr70453	transcription start site region 70453	within coordinates
Tssr70454	transcription start site region 70454	129 bp downstream
Tssr70455	transcription start site region 70455	152 bp downstream
Tssr70456	transcription start site region 70456	188 bp downstream
Tssr70457	transcription start site region 70457	264 bp downstream
Tssr70458	transcription start site region 70458	494 bp downstream