rs235635275 SNP Detail

Summary

• ID
  rs235635275
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37355696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCTTTT ATATATGTTG
  GACTTCTGCA AATATATATT GAGTTATATA TCCTTTTACT AACTCCTATT AAATGTGGAA
  GAATGTTTAA TTGTCAACTA AACTGGTATA TTTGGAAAAA CTCTGTCTTA GGGTTTCAGA
  GACACCATGA CCAAGGCAAC TCTTTTTTTT TTGGTTTTTT TTTGTTTTTT GTTTTTTTTC
  T
  CGAGGCAGGG TTTCTCTGTA TAGCCCTGGC TGTCCTGGAA CTCACTTTGT AGACCAGACT
  GGCCTCGAAC TCAGAAATCC ACCTGCCTCT GCCTCCCGAG TGTTGGGATT AAAGGCATGC
  ACCACCATGT CCAGCTAGAC CAAGGCAACT CTCATAAAGG ATAAGTTTTA ATTGGAGCCA
  TTTAGTTTCA GAGGTTTAGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	ZALENDE/EiJ
ss357580975	MGP_WTSI_3_37200469	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	ZALENDE/EiJ
rs235635275					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357580975	MGP_WTSI_3_37200469	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37355696 () rs orientation: forward

Symbol	Name	Function Class
Rr374834	regulatory region 374834	740 bp upstream
Rr575450	regulatory region 575450	1191 bp proximal
Rr575451	regulatory region 575451	1314 bp proximal