rs235636771 SNP Detail

Summary

• ID
  rs235636771
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24915180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCAGGA AGGAGAAGCG
  ACTGCCGCGA GGGAAGCCCG CCGGCTCGCT GGGCGCCGCC ATCTTGCTGG CGTGCGGGCA
  GCGGGGCCAA GAGGGCGTGC CGGCGACAGT TCGGAGGAGC GTGCACGCCA CCGCCGGCGC
  GCGGCGGCAG GAGCGGGAAC CGCAGCCCGG GGCTGGGCTC AGGCCGGGGC AGGAGGCGGG
  K
  CCTGGCGGCG GGGCGGGGCT GGGGGCCGAG GCGGCGGCCC GGGTCGCGGA GGCGTAGGAG
  GCCTCGGGGC GGGAGGAGGC GGCGCCGGAG GCCCAGGCCG AGGCGGCACT GGCGGCTGCG
  GCTCCGGCTC TGCGGGTACT CTTGCGCCTG GTGACCCGCC GCGAGCCCGG CGTGCGTGGT
  CCATGGTGGG GTTCAGGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss397861065	MGP_WTSI_17_24833151	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs235636771					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861065	MGP_WTSI_17_24833151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24915180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	within coordinates
Gfer	growth factor, augmenter of liver regeneration	115 bp upstream
Noxo1	NADPH oxidase organizer 1	28 bp upstream
Rr523392	regulatory region 523392	within coordinates
Rr523393	regulatory region 523393	127 bp distal
Rr523394	regulatory region 523394	313 bp proximal
Tssr5034	transcription start site region 5034	350 bp downstream
Tssr143060	transcription start site region 143060	70 bp upstream
Tssr143061	transcription start site region 143061	454 bp upstream
Tssr146764	transcription start site region 146764	210 bp upstream
Tssr146765	transcription start site region 146765	98 bp upstream
Tssr146766	transcription start site region 146766	70 bp upstream
Tssr146767	transcription start site region 146767	40 bp upstream
Tssr146768	transcription start site region 146768	within coordinates
Tssr146769	transcription start site region 146769	299 bp downstream
Tssr146770	transcription start site region 146770	335 bp downstream
Tssr146771	transcription start site region 146771	363 bp downstream