rs235637456 SNP Detail

Summary

• ID
  rs235637456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137724083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTGCAA ATTAGTTAGC
  TTAAGCAGTG TATTAGAAAA TGTGTTGGAA GGCGTTGCAT GGCCAGGTGT CCTTCATTCG
  TACTGAGTGT TCACGTGTTC GTCGAAATGC AAGGTGTGTT GAAAACACAG GAATTGCATG
  TAAACTTGAA GCTGGAAGCA GGCATCAGAT TTGCACTGCA GGACAACCTT CCCCCCCCCC
  Y
  CCCCCCAGCC ACTTGAAGGA GAAATGGCCA CACTGATTGG AAATAGTCAA TGGCTGGTCT
  CTAGCTGAGG GGGAGATGGG ATGGCAGGCC TGGAAGGAGA CAGAAAGCTA ACATGAACAG
  TTGTAAACGC AAGGAGAGTA TGCTGAGAGT TTCTTAACAA ACCCGCTGGA AACTTGTGCT
  TGGTGAAGTC ACAGCTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363429386	MGP_WTSI_4_137552687	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	T	C	C	T	C	C	T	T	T	T	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C	T	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235637456					SNP	T	C	C	T	C	C	T	C	C	T	T	T	T	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C	T	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363429386	MGP_WTSI_4_137552687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137724083 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Rr86598	regulatory region 86598	718 bp proximal
Rr100351	regulatory region 100351	82 bp distal
Tssr39810	transcription start site region 39810	1955 bp downstream
Tssr39811	transcription start site region 39811	935 bp downstream