rs235638201 SNP Detail

Summary

• ID
  rs235638201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117942317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCGCAAG ATCCTAAGCG
  CTAAAGGCTG AGTACGCCAA GGCTGCGTGG GCGGAGACCT ATTTTTCTGA CAAGTTCCAG
  GGCTCCTGTG CGGGATCGGA GTCTCCCCCT TCACTTTCAG CCCGAGAGCT GTGCGCCAAG
  CAGCAGGGGG CGGAGAAATG AACCCGTCCG TCCCCGTCCC CCGCCCCCGC CCCCGAGAAC
  Y
  CTCCCCCCTC CCTGCTTCCT GCCTCTTTAA AAGGTCCTGG GCTCCTCAGT CAAGCCAGCC
  ACTGCCTGGA GTCAGCCAGC CTCATCGGAC TTCTGCAGGC AATCGCGAAG CTGCTATCCA
  GTTCTGCCAC GGTCTCTCCC GGCGCACCGG CAGTCTCAGC GTCTTCACCG GACTCAGCGT
  CCTTGTCCTT CACTTCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355402431	MGP_WTSI_2_117937572	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235638201					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355402431	MGP_WTSI_2_117937572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117942317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	within coordinates
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	613 bp proximal
Gm13986	predicted gene 13986	634 bp upstream
Rr55415	regulatory region 55415	within coordinates
Rr397201	regulatory region 397201	510 bp downstream
Thbs1	thrombospondin 1	40 bp upstream
Tssr19527	transcription start site region 19527	321 bp downstream
Tssr19528	transcription start site region 19528	43 bp upstream
Tssr19529	transcription start site region 19529	528 bp upstream
Tssr19530	transcription start site region 19530	818 bp upstream
Tssr19531	transcription start site region 19531	1213 bp upstream
Tssr19532	transcription start site region 19532	1255 bp upstream