rs235639118 SNP Detail

Summary

• ID
  rs235639118
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57919451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACTTTGT CCTGCTGGAG
  GTTGGGACAG GTGGTCTAGG ACAAACCAGT ACCAAGCAGC TCATCAACCA CTGTCCAGGT
  CTTCAGAGTA CTTGGCTTGG GTTCTGCATT TGTTCTGCCT GGTTTTTCAT CCAAGTCTTG
  GTAAGAGAAC CCAAACCTAG AGTTTTTGTT TGTTTGTTTT CCTTTTTCTT CATCCCCCTC
  C
  TCCCTGAGAC AGGGTTTCTC TGTGTAGCCT TGGCTGTCCT GGAACTCACT CTGTACACCA
  GGTTGGCCTT GAACTCAGAA ATCAGCCTGC CTCTGCCTCT CAGGTGCTGG GATTAAAGGT
  GTGCGCCACC ACTGCCCGGC CCAAGCCTAG AGTTTTAAGT CTTGTTTTAG GGCAGAGTGA
  TCCTTGGATG GAGACAGCAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ
ss383510937	MGP_WTSI_11_57842127	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ
rs235639118					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383510937	MGP_WTSI_11_57842127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57919451 () rs orientation: forward

Symbol	Name	Function Class
Gm51897	predicted gene, 51897	within coordinates
Larp1	La ribonucleoprotein 1, translational regulator	within coordinates
Rr386121	regulatory region 386121	90 bp upstream